Publications

Publications using facility instrumentation:

Loftus SE, Johnson ZI (2019). Reused Cultivation Water Accumulates Dissolved Organic Carbon and Uniquely Influences Different Marine Microalgae. Frontiers in Bioengineering and Biotechnology 7. DOI: 10.3389/fbioe.2019.00101

Hogle SL, Dupont CL, Hopkinson BM, King AL, Buck KN, Roe KL, Stuart RK, Allen AE, Mann EL, Johnson ZI, Barbeau KA (2018). Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. Proc Natl Acad Sci U S A: 201813192. DOI: 10.1073/pnas.1813192115

Duan Y, Xie N, Song Z, Ward CS, Yung C-M, Hunt DE, Johnson ZI, Wang G (2018). High-resolution Time-series Reveals Seasonal Patterns of Planktonic Fungi at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA). Applied & Environmental Microbiology. DOI:10.1128/aem.00967-18

Prairie JC, Ziervogel K, Camassa R, McLaughlin RM, White BL, Johnson ZI, Arnosti C (2017) Ephemeral aggregate layers in the water column leave lasting footprints in the carbon cycle. Limnology and Oceanography Letters. DOI: 10.1002/lol2.10053

Ma L, Calfee BC, Morris JJ, Johnson ZI, Zinser ER (2017). Degradation of hydrogen peroxide at the ocean/’s surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus. ISME J. DOI: 10.1038/ismej.2017.182

Gainer PJ, Pound HL, Larkin AA, LeCleir GR, DeBruyn JM, Zinser ER, Johnson ZI, Wilhelm SW (2017). Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean. PLOS ONE 12: e0184371. DOI: 10.1371/journal.pone.0184371

Cohen NR, Ellis K, Burns WG, Lampe RH, Schuback N, Johnson Z, Sañudo-Wilhelmy S, Marchett A (2017). Iron and vitamin interactions in marine diatom isolates and natural assemblages of the Northeast Pacific Ocean. Limnology & Oceanography DOI: 10.1002/lno.10552

Johnson ZI, Bidigare RR, Blinebry SK, Brown SL, Cullen JJ, Loftus SE, Redalje DG, Swink C, Van Mooy BAS (2017). Screening for lipids from marine microalgae using Nile Red in Handbook of Hydrocarbon and Lipid Microbiology Series. Consequences of Microbial Interactions with Hydrocarbons, Oils and Lipids: Production of Fuels and Chemicals Springer. DOI: 10.1007/978-3-319-31421-1_382-1

Ward CD, Yung C-M, Davis KM, Blinebry SK, Williams TC, Johnson ZI, Hunt DE (2017). Annual community patterns are driven by seasonal switching between closely related marine bacteria. ISME J. DOI: 10.1038/ismej.2017.4

Yung C-M, Ward CS, Davis KM, Johnson ZI, Hunt DE (2016). Diverse and temporally-variable particle-associated microbial communities are insensitive to bulk seawater environmental parameters. Applied & Environmental Microbiology. DOI: 10.1128/aem.00395-16

McMurray SE, Johnson ZI, Hunt DE, Pawlik JR, Finelli CM (2016). Selective feeding by the giant barrel sponge enhances foraging efficiency. Limnology & Oceanography. DOI: 10.1002/lno.10287

Morris JJ, Johnson ZI, Wilhelm SW, Zinser ER (2016). Diel regulation of hydrogen peroxide defenses by open ocean microbial communities. Journal of Plankton Research. DOI: 10.1093/plankt/fbw016

Larkin AA, Blinebry SK, Howes C, Lin Y, Loftus SE, Schmaus CA, Zinser ER and Johnson ZI (2016). Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific. ISME J. DOI: 10.1038/ismej.2015.244

Chandler JW, Lin Y, Gainer PJ, Post AF, Johnson ZI, Zinser ER (2016). Variable but persistent coexistence of Prochlorococcus ecotypes along temperature gradients in the ocean’s surface mixed layer. Environmental Microbiology Reports. DOI: 10.1111/1758-2229.12378

Kopf A et al. 2015. The ocean sampling day consortium. GigaScience 4:27 DOI: 10.1186/s13742-015-0066-5

Ribalet F, Swalwell JE, Clayton S, Jimenez V, Sudek S, Lin Y, Johnson ZI, Worden AZ, and Armbrust EV (2015) Light-driven synchrony of Prochlorococcus growth and mortality in the north Pacific gyre. PNAS DOI: 10.1073/pnas.1424279112

Huntley ME, Johnson ZI, Brown SL, Sills DL, Gerber L, Archibald I, Machesky SC, Granados J, Beal C & Greene CH 2015. Demonstrated large-scale production of marine microalgae for fuels and feed. Algal Research. DOI: 10.1016/j.algal.2015.04.016

Johnson ZI, Martiny AC. 2015. Techniques for Quantifying Phytoplankton Biodiversity. Annual Review of Marine Science 7. DOI: 10.1146/annurev-marine-010814-015902

Yung C-M, Vereen MK, Herbert A, Davis KM, Yang J, Kantorowska A, Ward CS, Wernegreen JJ, Johnson ZI & Hunt DE 2015. Thermally adaptive tradeoffs in closely-related marine bacterial strains. Environmental Microbiology DOI: 10.1111/1462-2920.12714

Dupont C, Valas R, McCrow J, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle S, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau K, Venter JC, Allen AE(2015). Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities ISME Journal. DOI: 10.1038/ismej.2014.198

Wang X, Singh P, Gao Z, Zhang X, Johnson ZI, Wang G. 2014. Distribution and Diversity of Planktonic Fungi in the West Pacific Warm Pool. PLoS ONE 9:e101523, DOI: 10.1371/journal.pone.0101523

Johnson ZI, Wheeler BJ, Blinebry SK, Carlson CM, Ward CS, and Hunt DE (2013), Dramatic variability of the carbonate system at a temperate coastal ocean site (Beaufort, North Carolina, USA) is regulated by physical and biogeochemical processes on multiple timescales, PLoS ONE. DOI:10.1371/journal.pone.0085117

Jiao N, Luo T, Zhang R, Yan W, Lin Y, Johnson ZI, Tian J, Yuan, D, Yang Q, Sun J, Hu D and Wang P (2013) Presence of Prochlorococcus in the aphotic waters of the western Pacific Ocean, Biogeosciences Discuss. 10, 9345-9371, DOI:10.5194/bgd-10-9345-2013, 2013

Lin Y, Gazsi K, Lance VP, Larkin A, Chandler J, Zinser ER, and Johnson ZI (2013) In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size. Environmental Microbiology. DOI:10.1111/1462-2920.12135

Bittar TB, Lin Y, Sassano LR, Wheeler BJ, Brown SL, Cochlan WP and Johnson ZI (2013) Carbon allocation under light and nitrogen resource gradients in two model marine phytoplankton. Journal of Phycology 49(3) 523-535. DOI 10.1111/jpy.12060

Hunt DE, Lin Y, Church MJ, Karl DM, Izzo LK, Tringe SG and Johnson ZI (2013) The relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. Applied and Environmental Microbiology 79(1) 177-184 DOI: 10.1128/AEM.02155-12

Ferrón, S; Ho, D; Johnson, Z; Huntley, M (2012) Air-water fluxes of N2O and CH4 during microalgae cultivation (Staurosira sp.) in an open raceway pond. Environmental Science & Technology 46(19) 10842-10848 DOI: 10.1021/es302396jy

Ritchie AE and Johnson ZI (2012) Abundance and genetic diversity of aerobic anoxygenic phototrophic bacteria of coastal regions of the Pacific Ocean. Applied and Environmental Microbiology 78(8) 2858-2866 DOI: 10.1128/AEM.06268-11

Rowe JM, DeBruyn JM, Poorvin L, LeCleir GR, Johnson ZI, Zinser ER and Wilhelm SR (2011) Viral and bacterial abundance and production in the Western pacific Ocean and the relation to other oceanic realms. FEMS Microbiology Ecology DOI: 10.1111/j.1574-6941.2011.01223.x

Morris JJ, Johnson ZI, Szul MJ, Keller M, Zinser ER (2011) Dependence of the cyanobacterium Prochlorococcus on hydrogen peroxide scavenging microbes for growth at the ocean’s surface. PLoS One 6(2) e16805.

Johnson ZI, Shyam R, Ritchie AE, Mioni C, Lance VP, Murray JW, Zinser ER (2010) The effects of iron- and light-limitation on phytoplankton communities of deep chlorophyll maxima of the Western Pacific Ocean. Journal of Marine Research 68(2): 283-308.

Marchetti A, Varela DE, Lance VP, Johnson Z, Palmucci M, Giordano M, and Armbrust EV (2010) Iron and silic acid effects on phytoplankton productivity, diversity and chemical composition in the central equatorial Pacific Ocean. Limnology Oceanography 55: 11-29.

Morris JJ, Kirkegaard R, Johnson ZI, Zinser EZ (2008) Robust growth of Prochlorococcus colonies and dilute liquid cultures: facilitation by “helper” heterotrophic bacteria.  Applied and Environmental Microbiology 74, 4530-4534.

Publications of potential interest

Perkel J. 2010. EBB AND FLOW: Cytometry For The Next Generation. Science 853-855

Rodrigue, S., Materna, A.C., Timberlake, S.C., Blackburn, M.C., Malmstrom, R.R., Alm, E.J. and Chisholm, S.W., 2010. Unlocking Short Read Sequencing for Metagenomics. PLoS ONE. 5, e11840.

Woyke, T., Xie, G., Copeland, A., González, J.M., Han, C., Kiss, H., Saw, J.H., Senin, P., Yang, C., Chatterji, S., Cheng, J.-F., Eisen, J.A., Sieracki, M.E. and Stepanauskas, R., 2009. Assembling the Marine Metagenome, One Cell at a Time. PLoS ONE. 4, e5299

Stepanauskas, R. and Sieracki, M.E., 2007. Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time. Proc. Natl. Acad. Sci. U. S. A. 104, 9052-9057.

Casey, J.R., Lomas, M.W., Mandecki, J. and Walker, D.E., 2007. Prochlorococcus contributes to new production in the Sargasso Sea deep chlorophyll maximum. Geophys. Res. Lett. 34, 5.

Shapiro, H.M., 2003. Practical Flow Cytometry, 4TH ED. ed. JOHN WILEY, Hoboken.

Li, W.K.W., 1994. Primary Production Of Prochlorophytes, Cyanobacteria, And Eukaryotic Ultraphytoplankton – Measurements From Flow Cytometric Sorting. Limnol. Oceanogr. 39, 169-175.

last updated July 2019